Detection of hypervirulent Klebsiella pneumoniae (hvKp) strains directly from spiked blood cultures using a commercial Loop-Mediated isothermal amplification (LAMP) assay

Autores de FUNDANET

• 

  Saxx Gonxxxxx Goxxx

  Autor

Autores ajenos a FUNDANET

• Vecilla, DF
• Grande, JR
• García, ZM
• Fernández, SG
• Ruiz, MS
• Mesones, MPR
• del Arco, JLDD
• Gutiérrez, MJU
• Lomoro, MC
• Fariñas, MC
• Ocampo-Sosa, A

Unidades de investigación

• FISABIO

  

  Investigador Principal

  Paula Gutierrez Martinez

• Grupo investigación Cristina

  

  Investigador Principal

  Paula Gutierrez Martinez

• grupo investigacion sara

  

  Colaborador

  Saxx Gonxxxxx Goxxx

• grupo investigacion sara

  

  Colaborador

  Saxx Gonxxxxx Goxxx

• grupo investigacion sara

  

  Colaborador

  Saxx Gonxxxxx Goxxx

• UI Sara TEST

  Gestor

  Frxx Saxxx Abxxxxx

Abstract

BackgroundHypervirulent K. pneumoniae (hvKp) strains are characterized by their enhanced ability to evade immune responses and disseminate systemically. Rapid identification of hvKp strains is critical for guiding clinical management and implementing effective infection control measures. Loop-Mediated Isothermal Amplification (LAMP) assays provide a rapid and cost-effective method for detecting bacterial pathogens. This study evaluates the performance of the Eazyplex (R) hvKp assay for the direct detection of hvKp strains from spiked blood cultures.MethodsWe collected 20 K. pneumoniae (Kp) isolates between December 2021 and August 2024 from two hospitals in Northern Spain. Capsular serotyping and virulence gene detection were performed using PCR and whole-genome sequencing (WGS). The Eazyplex (R) hvKp LAMP assay was tested on spiked blood cultures inoculated with hvKp isolates. Virulence profiles were assessed using the Kleborate scoring system.ResultsSeventeen Kp isolates had a Kleborate score of >= 2, suggesting high virulence. The LAMP assay detected 87 out of 95 virulence targets, demonstrating an overall accuracy of 91.5%. Although eight target genes were not directly detected, fluorescence signals indicated amplification in all cases. The assay identified 16 strains with high virulence profiles (score >= 3), with 14 strains scoring 4 or 5. The LAMP-based test effectively detected hvKp directly from blood cultures, with time-to-results ranging from 6:43 to 17:11 min.ConclussionThe EazyplexR hvKp LAMP assay is a rapid and effective method for identifying hvKp strains directly from blood cultures. This study supports its potential utility in clinical microbiology for early detection and epidemiological surveillance of hvKp infections. However, limitations in the Kleborate scoring system indicate that additional virulence biomarkers may be needed to improve the accuracy of hvKp classification.

Keywords

• LAMP; Hypervirulent; <italic>Klebsiella pneumoniae</italic>; Diagnosis; Spiked blood cultures